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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1014
total RNA-seq
465
ChIP-seq
256
ATAC-seq
180
single cell RNA-seq
151
DNase-seq
87
RNA microarray
snATAC-seq
27
WGBS
23
pCHi-C
16
Hi-C
12
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1206
Transcription
465
DNA binding
410
DNA accessibility
37
DNA methylation
16
3D chromatin structure
Target of assay
444
histone modification
443
histone
broad histone mark
210
narrow histone mark
162
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
223
August, 2021
211
August, 2017
193
May, 2020
138
June, 2019
120
July, 2018
120
October, 2019
92
February, 2023
66
July, 2019
65
May, 2022
55
October, 2018
47
September, 2023
46
May, 2019
45
December, 2017
43
April, 2019
40
May, 2021
40
November, 2019
38
March, 2020
24
November, 2018
20
May, 2024
15
May, 2023
13
February, 2020
9
April, 2020
7
December, 2018
7
October, 2017
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
3
January, 2019
2
January, 2018
Available data
1520
bam
1377
bigWig
1053
tsv
600
bed narrowPeak
326
fastq
299
bigBed narrowPeak
171
bed bed3+
161
bed broadPeak
156
txt
149
bigBed broadPeak
89
tagAlign
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
4
bed bed3
1
bedpe
Organism
2247
Homo sapiens
Biosample type
2251
tissue
889
primary cell
643
cell line
338
in vitro differentiated cells
9
stem cell
Organ
527
connective tissue
468
adipose tissue
453
pancreas
336
liver
283
kidney
256
heart
brain
158
bone element
97
blood vessel
97
vasculature
88
limb
65
musculature of body
59
artery
56
eye
27
nerve
21
spleen
18
ureter
16
skeleton
15
epithelium
10
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2174
AMP
47
KPMP
21
T1D
9
LungMap
Genome assembly (visualization)
1475
GRCh38
1438
hg19
Lab
1945
AMP-T2D consortium
136
Katalin Susztak, Upenn
47
KPMP
42
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
9
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
21
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
snATAC-seq
organ_slims!
brain
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
2251 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
292
57
67
6
1
4
3
1
4
1
adipose tissue
382
2
3
3
1
liver
167
123
20
1
2
3
1
1
1
1
kidney
49
17
75
64
13
1
1
1
bone element
84
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