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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
460
total RNA-seq
133
ChIP-seq
85
RNA microarray
15
ATAC-seq
snATAC-seq
6
WGBS
3
pCHi-C
3
small RNA-seq
2
DNase-seq
Assay category
463
Transcription
133
DNA binding
17
DNA accessibility
6
DNA methylation
Target of assay
68
transcription factor
33
histone
33
histone modification
30
control
20
broad histone mark
15
RNA binding protein
13
narrow histone mark
10
chromatin remodeller
Date released
536
February, 2021
57
August, 2017
27
December, 2018
23
October, 2018
18
January, 2019
16
November, 2018
12
July, 2019
5
February, 2023
2
February, 2020
2
January, 2018
1
August, 2018
1
August, 2021
1
June, 2019
1
March, 2020
1
May, 2021
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
568
bam
538
bigWig
459
tsv
104
fastq
88
txt
75
bed narrowPeak
64
bigBed narrowPeak
8
tagAlign
6
bed bed3+
bed bed3
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
706
Homo sapiens
Biosample type
642
tissue
61
cell line
3
primary cell
1
in vitro differentiated cells
Organ
935
pancreas
790
liver
678
connective tissue
524
epithelium
491
adipose tissue
393
heart
348
kidney
285
brain
236
vasculature
230
blood vessel
155
bone element
141
artery
122
limb
95
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
12
skeleton
10
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
706
AMP
1
T1D
Genome assembly (visualization)
547
hg19
544
GRCh38
Lab
706
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
assay_title!
snATAC-seq
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
707 results
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total RNA-seq
ChIP-seq
RNA microarray
ATAC-seq
WGBS
pCHi-C
small RNA-seq
DNase-seq
tissue
adipose tissue
382
2
3
3
1
bone element
84
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
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cell line
GM12878
60
1
primary cell
mesenchymal stem cell of adipose
1
1
megakaryocyte
1
in vitro differentiated cells
white fat cell
1
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