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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
49
ATAC-seq
snATAC-seq
47
WGBS
3
Hi-C
Assay category
177
Transcription
49
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
113
May, 2022
76
February, 2023
59
September, 2020
18
February, 2021
7
August, 2020
3
October, 2022
Available data
142
fastq
132
zippedFastqFolder
10
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
276
Homo sapiens
Biosample type
276
primary cell
Organ
152
epithelium
152
pancreas
Project
276
HPAP
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
3564
AMP-T2D consortium
325
Kyle Gaulton, UCSD
276
Klaus Kaestner, Upenn
136
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
37
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
3
audit script error
assay_title!
snATAC-seq
files.file_type!
bigBed broadPeak
vcf
organ_slims!
blood
BIOSAMPLE
ASSAY
276 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
Hi-C
primary cell
pancreatic alpha cell
42
29
31
1
Langerhans cell
85
pancreatic beta cell
11
16
16
1
exocrine cell
39
pancreatic acinar cell
4
1
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