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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
182
total RNA-seq
95
ChIP-seq
21
ATAC-seq
3
DNase-seq
3
WGBS
3
small RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
186
Transcription
95
DNA binding
24
DNA accessibility
4
DNA methylation
2
3D chromatin structure
1
DNA sequencing
Target of assay
53
histone
53
histone modification
39
narrow histone mark
31
control
14
broad histone mark
11
transcription factor
1
RNA binding protein
Date released
194
May, 2020
40
May, 2022
35
August, 2021
26
August, 2017
10
July, 2019
October, 2019
5
December, 2019
3
February, 2021
March, 2020
2
June, 2019
1
February, 2020
Available data
673
bam
615
bigWig
fastq
435
bed narrowPeak
358
bigBed narrowPeak
171
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
1
vcf
Organism
316
Homo sapiens
Biosample type
269
tissue
34
cell line
13
primary cell
Organ
577
connective tissue
445
adipose tissue
432
pancreas
378
heart
316
kidney
316
liver
226
epithelium
179
vasculature
177
brain
176
blood vessel
159
bone element
115
artery
88
musculature of body
53
limb
40
eye
18
ureter
16
skeleton
10
embryo
9
lung
2
pericardium
1
blood
1
bodily fluid
1
bone marrow
1
nerve
1
spinal cord
1
thymus
Project
316
AMP
Genome assembly (visualization)
226
hg19
180
GRCh38
Lab
245
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
assay_title!
snATAC-seq
files.file_type!
fastq
month_released!
March, 2020
October, 2019
BIOSAMPLE
ASSAY
316 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
STARR-seq
pCHi-C
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
165
73
20
2
1
1
right lobe of liver
3
1
1
2
cell line
HepG2
9
18
1
1
2
2
1
primary cell
hepatocyte
5
4
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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