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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
Hi-C
5
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
snATAC-seq
Assay category
39
DNA binding
34
DNA accessibility
6
3D chromatin structure
6
DNA methylation
1
Transcription
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
7
May, 2019
6
July, 2019
2
March, 2020
1
January, 2018
1
May, 2021
1
May, 2022
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
33
bed bed3+
33
bigBed broadPeak
15
tagAlign
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
87
Homo sapiens
Biosample type
74
tissue
13
primary cell
Organ
614
liver
518
pancreas
368
epithelium
324
kidney
260
brain
211
heart
200
connective tissue
154
vasculature
148
blood vessel
109
limb
90
adipose tissue
86
musculature of body
69
artery
61
blood
61
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
18
ureter
9
bone element
9
lung
8
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
86
AMP
1
T1D
Genome assembly (visualization)
66
hg19
47
GRCh38
Lab
86
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
assay_title!
snATAC-seq
files.file_type!
tsv
month_released!
February, 2021
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
4
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
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primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
1
megakaryocyte
1
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