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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
553
ChIP-seq
24
ATAC-seq
20
total RNA-seq
6
DNase-seq
5
WGBS
4
Hi-C
2
RRBS
2
STARR-seq
1
pCHi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
553
DNA binding
30
DNA accessibility
21
Transcription
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
104
histone modification
103
histone
82
recombinant protein
61
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
54
August, 2017
53
November, 2018
50
May, 2020
40
May, 2022
26
August, 2021
8
October, 2019
3
February, 2021
3
July, 2019
2
June, 2019
1
December, 2018
1
March, 2020
Available data
682
bam
623
bigWig
465
fastq
442
bed narrowPeak
358
bigBed narrowPeak
tsv
87
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
619
Homo sapiens
Biosample type
386
cell line
209
tissue
15
in vitro differentiated cells
9
primary cell
Organ
617
liver
518
pancreas
368
epithelium
324
kidney
260
brain
225
heart
206
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
86
musculature of body
83
artery
61
blood
61
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
18
ureter
16
skeleton
9
lung
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
619
AMP
Genome assembly (visualization)
464
hg19
370
GRCh38
Lab
557
AMP-T2D consortium
40
Karen Mohlke, UNC
22
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
snATAC-seq
files.file_type!
tsv
BIOSAMPLE
ASSAY
619 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
RRBS
STARR-seq
pCHi-C
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
1
1
2
2
1
1
tissue
liver
145
20
20
2
3
1
1
1
right lobe of liver
10
1
2
1
islet of Langerhans
1
pituitary gland
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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