Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
51
ATAC-seq
41
WGBS
snATAC-seq
Assay category
52
Transcription
51
DNA accessibility
41
DNA methylation
Date released
113
May, 2022
19
September, 2020
10
February, 2023
2
February, 2021
Available data
3392
bam
3169
bigWig
1753
bed narrowPeak
1600
tsv
1331
fastq
1042
bigBed narrowPeak
398
tagAlign
bed broadPeak
285
bigBed broadPeak
272
bed bed3+
132
zippedFastqFolder
103
txt
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
144
Homo sapiens
Biosample type
133
primary cell
5
in vitro differentiated cells
5
tissue
1
cell line
Organ
80
epithelium
80
pancreas
6
connective tissue
4
bone element
4
skeleton
1
brain
1
liver
Project
132
HPAP
12
AMP
Genome assembly (visualization)
12
hg19
2
GRCh38
Lab
132
Klaus Kaestner, Upenn
12
AMP-T2D consortium
Audit category:
1
inconsistent replicate
assay_title!
snATAC-seq
files.file_type!
bed broadPeak
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
144 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ATAC-seq
WGBS
primary cell
Langerhans cell
52
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
osteoblast
1
in vitro differentiated cells
chondrocyte
5
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
cell line
HepG2
1
Download