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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
46
ATAC-seq
41
WGBS
snATAC-seq
3
Hi-C
Assay category
52
Transcription
46
DNA accessibility
41
DNA methylation
3
3D chromatin structure
Date released
113
May, 2022
19
September, 2020
4
February, 2021
3
February, 2023
3
October, 2022
Available data
3392
bam
3169
bigWig
1817
bed narrowPeak
1600
tsv
1331
fastq
1042
bigBed narrowPeak
398
tagAlign
bed broadPeak
285
bigBed broadPeak
272
bed bed3+
160
txt
132
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
142
Homo sapiens
Biosample type
135
primary cell
7
in vitro differentiated cells
Organ
83
epithelium
83
pancreas
4
connective tissue
Project
135
HPAP
7
AMP
Genome assembly (visualization)
10
hg19
Lab
135
Klaus Kaestner, Upenn
4
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
3
audit script error
1
inconsistent ontology term
assay_title!
snATAC-seq
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
142 results
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Clear Filters
single cell RNA-seq
ATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
52
pancreatic alpha cell
22
25
1
pancreatic beta cell
13
16
1
pancreatic acinar cell
4
1
in vitro differentiated cells
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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