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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
61
ChIP-seq
2
ATAC-seq
Assay category
206
DNA accessibility
61
DNA binding
Target of assay
47
transcription factor
28
histone
28
histone modification
broad histone mark
14
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
60
November, 2017
August, 2017
9
November, 2018
7
October, 2019
2
October, 2017
1
March, 2019
1
November, 2020
Available data
2781
bam
2531
bigWig
1511
tsv
1311
bed narrowPeak
975
fastq
776
bigBed narrowPeak
267
bed broadPeak
260
bigBed broadPeak
233
bed bed3+
211
tagAlign
160
txt
132
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
23
bedpe bed3+
23
hic
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
267
Homo sapiens
Biosample type
183
tissue
51
cell line
33
primary cell
Organ
78
kidney
55
liver
43
brain
36
limb
33
musculature of body
30
heart
20
epithelium
18
ureter
15
vasculature
11
blood vessel
9
pancreas
8
connective tissue
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
267
AMP
Genome assembly (visualization)
252
GRCh38
243
hg19
Lab
265
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
assay_title!
snATAC-seq
files.file_type!
bed bed3
month_released!
August, 2017
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
267 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
muscle of leg
13
+ See 43 more…
cell line
HepG2
50
Panc1
1
primary cell
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
endothelial cell of umbilical vein
2
+ See 17 more…
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