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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
147
ATAC-seq
106
ChIP-seq
Assay category
147
DNA accessibility
106
DNA binding
Target of assay
90
histone
90
histone modification
53
broad histone mark
37
narrow histone mark
16
transcription factor
6
RNA binding protein
Date released
78
August, 2021
63
February, 2023
40
May, 2024
30
May, 2021
20
August, 2017
20
May, 2022
1
April, 2019
1
November, 2017
Available data
bam
2957
bigWig
1624
bed narrowPeak
1584
tsv
1331
fastq
972
bigBed narrowPeak
349
tagAlign
313
bed broadPeak
276
bigBed broadPeak
262
bed bed3+
157
txt
132
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
4
bed bedgraph
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
253
Homo sapiens
Biosample type
209
tissue
30
primary cell
14
cell line
Organ
76
heart
64
kidney
35
artery
35
blood vessel
35
vasculature
34
liver
27
eye
13
musculature of body
12
epithelium
6
pancreas
2
adipose tissue
2
connective tissue
1
brain
Project
253
AMP
Genome assembly (visualization)
139
GRCh38
114
hg19
Lab
85
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
30
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Struan F.A. Grant, CHOP
assay_title!
snATAC-seq
files.file_type!
bam
lab.title!
Struan F.A. Grant, CHOP
month_released!
October, 2019
BIOSAMPLE
ASSAY
253 results
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ATAC-seq
ChIP-seq
tissue
kidney
64
left cardiac atrium
40
coronary artery
35
liver
20
retina
15
+ See 7 more…
primary cell
CD8-positive, alpha-beta T cell
30
cell line
HepG2
14
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