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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
19
ChIP-seq
3
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
WGBS
Assay category
398
Transcription
19
DNA binding
5
DNA accessibility
2
DNA methylation
Target of assay
17
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
17
August, 2017
12
July, 2019
5
October, 2018
1
January, 2018
1
June, 2019
1
November, 2018
October, 2017
1
October, 2019
Available data
441
bam
424
bigWig
401
tsv
43
fastq
12
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
424
Homo sapiens
Biosample type
422
tissue
2
primary cell
Organ
622
liver
618
pancreas
569
connective tissue
424
adipose tissue
301
epithelium
224
heart
215
brain
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
15
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
424
AMP
Genome assembly (visualization)
422
hg19
421
GRCh38
Lab
424
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
snATAC-seq
month_released!
October, 2017
organ_slims!
blood
BIOSAMPLE
ASSAY
424 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
WGBS
tissue
adipose tissue
381
1
2
2
white adipose tissue
12
omental fat pad
4
3
1
2
subcutaneous adipose tissue
6
2
1
1
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
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