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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
20
ATAC-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
Assay category
63
DNA binding
30
DNA accessibility
7
DNA methylation
Target of assay
63
transcription factor
21
RNA binding protein
15
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
551
February, 2021
334
November, 2017
303
May, 2021
272
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
113
zippedFastqFolder
112
fastq
111
bam
111
bed narrowPeak
100
bigWig
73
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
txt
1
csv
Organism
100
Homo sapiens
Biosample type
57
cell line
43
tissue
Organ
72
liver
12
blood
12
bodily fluid
7
pancreas
6
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
100
AMP
Genome assembly (visualization)
91
hg19
79
GRCh38
Lab
80
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
100 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
cell line
HepG2
44
1
GM12878
12
tissue
liver
4
20
2
spleen
3
1
2
body of pancreas
2
2
pancreas
2
1
brain
2
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