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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ChIP-seq
snATAC-seq
6
total RNA-seq
1
ATAC-seq
1
GRO-seq
Assay category
82
DNA binding
6
Transcription
1
DNA accessibility
Target of assay
54
transcription factor
13
control
13
histone
13
histone modification
10
RNA binding protein
10
chromatin remodeller
9
narrow histone mark
4
broad histone mark
Date released
27
December, 2018
18
January, 2019
15
November, 2018
13
December, 2017
13
February, 2018
August, 2021
2
January, 2018
2
May, 2021
Available data
88
bam
87
fastq
76
bigWig
68
bed narrowPeak
54
bigBed narrowPeak
6
tsv
3
bed bed3+
Organism
90
Homo sapiens
Biosample type
61
cell line
29
in vitro differentiated cells
Organ
917
pancreas
753
liver
677
connective tissue
512
epithelium
489
adipose tissue
294
heart
284
brain
226
vasculature
222
kidney
220
blood vessel
159
bone element
139
artery
122
limb
90
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
29
embryo
24
spleen
21
vein
18
ureter
16
skeleton
9
lung
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
90
AMP
Genome assembly (visualization)
76
hg19
75
GRCh38
1
hg18
Lab
90
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
snATAC-seq
month_released!
August, 2021
March, 2020
BIOSAMPLE
ASSAY
90 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
cell line
GM12878
60
1
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
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