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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
38
ChIP-seq
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
76
DNA accessibility
38
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
11
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
RNA binding protein
Date released
656
February, 2021
374
August, 2017
368
May, 2021
365
November, 2017
341
May, 2020
306
August, 2021
279
October, 2019
196
June, 2019
151
February, 2023
135
July, 2018
111
May, 2019
98
May, 2022
95
July, 2019
76
April, 2019
73
December, 2017
67
November, 2018
63
October, 2018
57
March, 2020
47
September, 2023
45
November, 2019
40
September, 2020
39
February, 2018
35
May, 2024
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
16
April, 2018
15
May, 2023
12
September, 2018
10
November, 2020
9
April, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
October, 2022
Available data
123
tsv
102
bed narrowPeak
64
xls
57
txt
45
bam
43
bigWig
20
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
305
Homo sapiens
Biosample type
223
tissue
42
in vitro differentiated cells
41
cell line
Organ
124
kidney
92
heart
34
liver
8
embryo
6
blood vessel
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
306
AMP
Genome assembly (visualization)
102
GRCh38
56
hg19
Lab
145
AMP-T2D consortium
122
Katalin Susztak, Upenn
35
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_title!
snATAC-seq
organ_slims!
adrenal gland
epithelium
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
306 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
9
17
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
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