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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
19
ATAC-seq
16
total RNA-seq
3
single cell RNA-seq
Assay category
39
DNA binding
19
DNA accessibility
19
Transcription
Target of assay
28
histone
28
histone modification
18
broad histone mark
11
control
10
narrow histone mark
Date released
688
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
314
October, 2019
313
August, 2021
218
June, 2019
203
February, 2023
178
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
9
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
Available data
56
fastq
54
bam
45
bigWig
28
bed narrowPeak
15
tsv
14
tagAlign
6
bigBed narrowPeak
4
bed broadPeak
Organism
77
Homo sapiens
Biosample type
39
in vitro differentiated cells
38
tissue
Organ
16
brain
14
kidney
13
embryo
5
pancreas
2
adipose tissue
2
connective tissue
1
spleen
Project
77
AMP
Genome assembly (visualization)
57
GRCh38
45
hg19
Lab
62
AMP-T2D consortium
14
Katalin Susztak, Upenn
1
Stephen Parker, UMich
Audit category:
4
missing controlled_by
Audit category:
2
inconsistent control read length
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
77 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
in vitro differentiated cells
pancreatic endoderm
9
4
definitive endodermal cell
3
2
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
+ See 2 more…
tissue
brain
15
kidney
11
3
body of pancreas
4
adipose tissue
1
cerebellum (Hemisphere)
1
+ See 3 more…
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