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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
9
total RNA-seq
7
ATAC-seq
5
RRBS
2
Hi-C
2
small RNA-seq
1
DNase-seq
1
pCHi-C
1
single cell RNA-seq
snATAC-seq
Assay category
32
DNA binding
12
Transcription
8
DNA accessibility
5
DNA methylation
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
5
control
Date released
26
August, 2017
11
June, 2019
8
February, 2023
5
July, 2019
5
March, 2020
2
February, 2021
1
February, 2020
1
January, 2018
1
May, 2022
Available data
29
bigWig
24
bed narrowPeak
19
bam
15
tagAlign
14
bed broadPeak
9
bigBed narrowPeak
8
tsv
4
bed bed3
4
txt
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
bigBed broadPeak
Organism
60
Homo sapiens
Biosample type
46
tissue
14
primary cell
Organ
935
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
348
kidney
286
brain
236
vasculature
blood vessel
159
bone element
141
artery
limb
95
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
10
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
60
AMP
Genome assembly (visualization)
40
hg19
17
GRCh38
Lab
60
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_title!
snATAC-seq
organ_slims!
blood vessel
limb
BIOSAMPLE
ASSAY
60 results
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ChIP-seq
total RNA-seq
ATAC-seq
RRBS
Hi-C
small RNA-seq
DNase-seq
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
1
4
1
1
psoas muscle
2
2
1
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 4 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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