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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
15
total RNA-seq
10
DNase-seq
4
Hi-C
3
ATAC-seq
2
pCHi-C
1
WGBS
Assay category
113
DNA binding
15
Transcription
13
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
71
histone
71
histone modification
45
broad histone mark
42
control
26
narrow histone mark
Date released
76
November, 2017
25
October, 2019
15
February, 2020
10
June, 2019
10
October, 2017
6
July, 2019
4
May, 2019
2
March, 2020
Available data
106
bam
75
tagAlign
64
bigWig
62
bed narrowPeak
62
bigBed narrowPeak
17
tsv
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
4
fastq
1
bed bedMethyl
1
bigBed bedMethyl
Organism
148
Homo sapiens
Biosample type
148
tissue
Organ
282
pancreas
217
kidney
207
epithelium
203
heart
165
liver
122
brain
95
connective tissue
69
blood vessel
69
vasculature
65
adipose tissue
46
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
bone element
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
148
AMP
Genome assembly (visualization)
307
GRCh38
hg19
Lab
148
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_title!
snDrop-seq
assembly!
hg19
month_released!
February, 2021
BIOSAMPLE
ASSAY
148 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
ATAC-seq
pCHi-C
WGBS
tissue
layer of hippocampus
22
caudate nucleus
14
1
1
substantia nigra
14
1
cingulate gyrus
12
middle frontal area 46
12
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