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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
total RNA-seq
20
ChIP-seq
14
ATAC-seq
2
WGBS
2
pCHi-C
1
DNase-seq
Assay category
62
Transcription
20
DNA binding
15
DNA accessibility
2
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
66
February, 2021
9
November, 2018
8
February, 2023
7
December, 2018
7
January, 2019
1
March, 2020
1
May, 2021
1
October, 2017
1
October, 2019
Available data
90
bam
74
bigWig
59
tsv
24
fastq
22
bed narrowPeak
13
bigBed narrowPeak
4
bed bed3
4
txt
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
101
Homo sapiens
Biosample type
100
tissue
1
primary cell
Organ
865
pancreas
790
liver
665
connective tissue
490
adipose tissue
433
epithelium
387
heart
328
kidney
283
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
100
AMP
1
T1D
Genome assembly (visualization)
84
hg19
82
GRCh38
Lab
100
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
assay_title!
snDrop-seq
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
101 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
DNase-seq
tissue
bone tissue
58
spleen
20
1
2
1
1
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
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primary cell
megakaryocyte
1
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