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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
309
ChIP-seq
Assay category
309
DNA binding
Target of assay
235
transcription factor
87
histone
histone modification
71
control
66
recombinant protein
50
broad histone mark
37
narrow histone mark
35
RNA binding protein
11
chromatin remodeller
2
other context
2
other post-translational modification
Date released
712
February, 2021
314
May, 2020
309
November, 2017
299
August, 2021
259
May, 2021
205
February, 2023
200
May, 2022
199
June, 2019
189
August, 2017
168
July, 2018
118
October, 2019
108
July, 2019
85
November, 2018
63
December, 2017
61
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
May, 2024
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
308
bam
297
fastq
250
bigWig
230
bed narrowPeak
230
bigBed narrowPeak
47
bed broadPeak
47
bigBed broadPeak
11
tagAlign
3
tar
Organism
309
Homo sapiens
Biosample type
291
cell line
12
tissue
6
primary cell
Organ
291
liver
18
brain
4
epithelium
4
vasculature
2
blood vessel
Project
309
AMP
Genome assembly (visualization)
248
hg19
205
GRCh38
Lab
309
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
7
inconsistent control read length
assay_title!
snDrop-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
309 results
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Clear Filters
ChIP-seq
cell line
HepG2
291
tissue
layer of hippocampus
3
caudate nucleus
2
cingulate gyrus
2
middle frontal area 46
2
substantia nigra
2
+ See 1 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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