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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
64
ATAC-seq
59
total RNA-seq
6
snATAC-seq
5
ChIP-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
165
Transcription
70
DNA accessibility
5
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
5
control
Date released
252
August, 2021
189
February, 2023
180
May, 2022
157
February, 2021
119
August, 2017
103
October, 2019
81
May, 2020
72
November, 2017
56
September, 2020
53
May, 2021
47
September, 2023
38
March, 2020
29
October, 2018
25
February, 2020
25
November, 2019
23
July, 2019
23
May, 2019
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
13
December, 2017
11
November, 2020
9
October, 2017
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
3
December, 2019
1
August, 2022
1
September, 2018
Available data
116
tsv
81
bed narrowPeak
64
xls
57
txt
bigWig
12
bam
4
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
251
Homo sapiens
Biosample type
229
tissue
22
cell line
in vitro differentiated cells
1
primary cell
Organ
130
kidney
92
heart
18
liver
6
blood vessel
6
vasculature
4
pancreas
3
epithelium
2
artery
1
adipose tissue
1
connective tissue
Project
252
AMP
Genome assembly (visualization)
64
GRCh38
2
hg19
Lab
128
Katalin Susztak, Upenn
102
AMP-T2D consortium
22
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
assay_title!
snDrop-seq
biosample_type!
in vitro differentiated cells
files.file_type!
bigWig
BIOSAMPLE
ASSAY
252 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
ChIP-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
4
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
1
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