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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
452
ChIP-seq
164
total RNA-seq
3
DNase-seq
3
small RNA-seq
2
WGBS
2
pCHi-C
1
ATAC-seq
1
Hi-C
1
RRBS
Assay category
452
DNA binding
167
Transcription
4
DNA accessibility
3
DNA methylation
1
3D chromatin structure
Target of assay
327
transcription factor
82
recombinant protein
77
control
57
RNA binding protein
45
histone modification
44
histone
25
broad histone mark
23
chromatin remodeller
19
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
144
May, 2020
63
December, 2017
53
November, 2018
28
August, 2017
9
August, 2021
7
July, 2019
5
January, 2019
2
March, 2020
1
December, 2018
1
February, 2020
1
October, 2019
Available data
669
bam
611
bigWig
465
fastq
435
bed narrowPeak
356
bigBed narrowPeak
169
tsv
82
tagAlign
61
bed broadPeak
61
bigBed broadPeak
7
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
629
Homo sapiens
Biosample type
377
cell line
237
tissue
15
in vitro differentiated cells
primary cell
Organ
629
liver
561
connective tissue
443
adipose tissue
425
pancreas
164
heart
66
blood vessel
66
vasculature
60
blood
60
bodily fluid
59
epithelium
58
bone element
56
artery
37
embryo
35
brain
25
spleen
15
kidney
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
629
AMP
Genome assembly (visualization)
542
hg19
495
GRCh38
Lab
620
AMP-T2D consortium
9
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
snDrop-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
629 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
small RNA-seq
WGBS
pCHi-C
ATAC-seq
Hi-C
RRBS
cell line
HepG2
360
14
1
1
1
tissue
liver
67
147
2
1
1
1
1
right lobe of liver
10
3
1
2
1
in vitro differentiated cells
hepatocyte
15
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