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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
518
total RNA-seq
84
RNA microarray
21
ATAC-seq
8
ChIP-seq
6
single cell RNA-seq
snDrop-seq
1
pCHi-C
Assay category
524
Transcription
21
DNA accessibility
8
DNA binding
Target of assay
5
transcription factor
3
control
Date released
638
February, 2021
397
November, 2017
352
August, 2017
313
August, 2021
278
October, 2019
194
May, 2020
167
May, 2021
163
June, 2019
120
July, 2018
115
May, 2019
102
February, 2023
87
November, 2018
80
April, 2019
July, 2019
75
December, 2017
74
October, 2018
66
May, 2022
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2019
4
March, 2023
4
November, 2020
1
August, 2018
1
August, 2022
1
October, 2022
Available data
543
bam
523
bigWig
523
tsv
89
txt
22
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
1
bed bed3
1
bed bed3+
Organism
638
Homo sapiens
Biosample type
542
tissue
70
cell line
primary cell
26
in vitro differentiated cells
Organ
452
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
epithelium
26
pancreas
8
skeleton
6
limb
5
kidney
3
liver
Project
638
AMP
Genome assembly (visualization)
545
hg19
540
GRCh38
Lab
638
AMP-T2D consortium
Audit category:
102
inconsistent ontology term
5
audit script error
1
inconsistent replicate
assay_title!
snDrop-seq
biosample_type!
primary cell
month_released!
July, 2019
organ_slims!
epithelium
BIOSAMPLE
ASSAY
638 results
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total RNA-seq
RNA microarray
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
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cell line
smooth muscle cell of the coronary artery
52
8
6
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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