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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
21
ATAC-seq
1
DNase-seq
Assay category
88
DNA binding
22
DNA accessibility
Target of assay
63
histone
63
histone modification
32
narrow histone mark
30
broad histone mark
29
transcription factor
RNA binding protein
2
chromatin remodeller
Date released
39
August, 2017
25
August, 2021
18
December, 2017
16
February, 2018
5
November, 2019
3
May, 2021
2
February, 2023
2
October, 2019
Available data
263
bam
235
bigWig
129
tsv
118
fastq
110
bed narrowPeak
37
tagAlign
25
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
110
Homo sapiens
Biosample type
946
tissue
327
cell line
184
primary cell
110
in vitro differentiated cells
2
stem cell
Organ
41
connective tissue
epithelium
14
embryo
12
liver
2
pancreas
Project
110
AMP
Genome assembly (visualization)
109
hg19
106
GRCh38
Lab
106
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
Audit category:
16
inconsistent control read length
assay_title!
snDrop-seq
organ_slims!
epithelium
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
110 results
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ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
38
1
1
neural progenitor cell
13
10
pancreatic endoderm
12
definitive endodermal cell
6
primitive gut cell
6
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