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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
229
ChIP-seq
139
total RNA-seq
97
single cell RNA-seq
78
ATAC-seq
23
DNase-seq
Assay category
236
Transcription
229
DNA binding
101
DNA accessibility
Target of assay
216
histone
216
histone modification
111
broad histone mark
105
narrow histone mark
8
RNA binding protein
8
transcription factor
5
control
1
chromatin remodeller
Date released
171
May, 2021
90
May, 2020
72
September, 2018
48
July, 2018
46
August, 2017
43
April, 2018
43
June, 2019
July, 2019
8
October, 2019
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
November, 2017
3
September, 2020
2
February, 2021
2
October, 2018
Available data
566
bigWig
561
bam
403
fastq
274
bed narrowPeak
252
tsv
153
zippedFastqFolder
100
tagAlign
88
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
27
bed bed3+
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
566
Homo sapiens
Biosample type
1645
tissue
566
primary cell
466
cell line
259
in vitro differentiated cells
3
stem cell
Organ
224
epithelium
192
pancreas
25
connective tissue
vasculature
24
kidney
20
blood vessel
15
vein
14
brain
10
liver
9
musculature of body
6
heart
3
eye
Project
376
AMP
180
T1D
10
HPAP
Genome assembly (visualization)
550
hg19
481
GRCh38
Lab
341
AMP-T2D consortium
215
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
Audit category:
37
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
snDrop-seq
month_released!
July, 2019
organ_slims!
vasculature
BIOSAMPLE
ASSAY
566 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
primary cell
monocyte
84
53
2
pancreatic alpha cell
7
10
12
13
CD8-positive, alpha-beta T cell
33
4
2
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
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