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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
240
total RNA-seq
136
single cell RNA-seq
94
ChIP-seq
44
ATAC-seq
27
snATAC-seq
6
WGBS
2
small RNA-seq
1
DNase-seq
1
RRBS
Assay category
378
Transcription
94
DNA binding
72
DNA accessibility
7
DNA methylation
Target of assay
73
histone
73
histone modification
40
narrow histone mark
33
broad histone mark
19
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
88
February, 2023
73
September, 2018
58
August, 2017
52
May, 2021
48
July, 2018
46
February, 2021
45
May, 2020
43
April, 2018
41
September, 2020
16
July, 2019
9
November, 2017
7
August, 2020
5
December, 2019
5
September, 2017
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
2
October, 2019
1
November, 2018
Available data
611
bigWig
607
bam
409
fastq
295
bed narrowPeak
268
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
551
Homo sapiens
Biosample type
1349
tissue
551
primary cell
489
cell line
257
in vitro differentiated cells
8
stem cell
Organ
263
pancreas
254
epithelium
15
connective tissue
12
brain
8
vasculature
6
kidney
5
blood vessel
5
liver
4
heart
2
adipose tissue
artery
2
musculature of body
1
pericardium
Project
286
AMP
169
HPAP
96
T1D
Genome assembly (visualization)
359
GRCh38
356
hg19
Lab
286
AMP-T2D consortium
169
Klaus Kaestner, Upenn
96
Kyle Gaulton, UCSD
Audit category:
27
audit script error
17
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
snDrop-seq
organ_slims!
artery
BIOSAMPLE
ASSAY
551 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
small RNA-seq
DNase-seq
RRBS
primary cell
pancreatic alpha cell
52
12
13
13
6
Langerhans cell
34
27
pancreatic beta cell
21
12
13
10
monocyte
53
exocrine cell
39
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