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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1012
total RNA-seq
593
ChIP-seq
232
ATAC-seq
180
single cell RNA-seq
175
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
21
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
snDrop-seq
Assay category
1208
Transcription
593
DNA binding
439
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
410
histone modification
409
histone
208
broad histone mark
201
narrow histone mark
106
control
79
transcription factor
17
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
542
February, 2021
229
August, 2021
225
August, 2017
172
October, 2019
160
June, 2019
143
May, 2020
120
July, 2018
115
May, 2019
80
April, 2019
77
July, 2019
October, 2018
66
May, 2022
64
February, 2023
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
24
February, 2020
19
April, 2020
16
November, 2017
15
May, 2023
9
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1830
bam
1724
bigWig
1068
tsv
909
bed narrowPeak
513
bigBed narrowPeak
319
fastq
tagAlign
210
bed broadPeak
202
bed bed3+
173
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2404
Homo sapiens
Biosample type
2406
tissue
981
primary cell
642
cell line
354
in vitro differentiated cells
10
stem cell
Organ
516
connective tissue
457
adipose tissue
438
pancreas
313
heart
296
kidney
291
liver
158
bone element
147
brain
133
blood vessel
133
vasculature
122
limb
73
artery
67
musculature of body
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2309
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1695
GRCh38
1575
hg19
Lab
2054
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
5
inconsistent control read length
assay_title!
snDrop-seq
files.file_type!
tagAlign
month_released!
October, 2018
organ_slims!
eye
BIOSAMPLE
ASSAY
2406 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
tissue
islet of Langerhans
278
60
67
6
1
7
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
75
20
1
2
3
1
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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