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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
32
total RNA-seq
21
ATAC-seq
10
Hi-C
7
RRBS
4
WGBS
4
pCHi-C
2
STARR-seq
2
single cell RNA-seq
1
DNase-seq
1
snATAC-seq
1
whole genome sequencing assay
Assay category
64
DNA binding
34
Transcription
23
DNA accessibility
11
DNA methylation
10
3D chromatin structure
1
DNA sequencing
Target of assay
42
histone
42
histone modification
25
broad histone mark
17
narrow histone mark
12
transcription factor
10
control
1
RNA binding protein
Date released
54
August, 2017
42
May, 2022
31
August, 2021
8
July, 2019
5
March, 2020
3
February, 2020
2
February, 2021
1
December, 2018
1
January, 2018
1
May, 2020
1
November, 2017
Available data
bam
690
bigWig
501
bed narrowPeak
467
fastq
405
bigBed narrowPeak
183
tsv
109
bed broadPeak
101
tagAlign
96
bigBed broadPeak
47
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
4
bedpe bed3+
4
hic
3
tar
1
bed bed3
1
csv
1
hdf5
1
txt
1
vcf
Organism
149
Homo sapiens
Biosample type
111
tissue
35
cell line
3
primary cell
Organ
257
pancreas
207
epithelium
207
kidney
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
149
AMP
Genome assembly (visualization)
60
hg19
Lab
78
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
1
audit script error
assay_title!
snDrop-seq
files.file_type!
bam
BIOSAMPLE
ASSAY
149 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
RRBS
WGBS
pCHi-C
STARR-seq
single cell RNA-seq
DNase-seq
snATAC-seq
whole genome sequencing assay
tissue
liver
23
20
20
1
1
3
1
1
skeletal muscle tissue
22
1
4
1
1
gastrocnemius medialis
1
4
psoas muscle
2
1
right lobe of liver
1
1
1
+ See 1 more…
cell line
HepG2
19
9
2
2
2
1
primary cell
endothelial cell of hepatic sinusoid
1
hepatocyte
1
skeletal muscle cell
1
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