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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
49
total RNA-seq
11
single cell RNA-seq
10
MeRIP-seq
6
snATAC-seq
1
Hi-C
Assay category
81
DNA accessibility
60
Transcription
1
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
128
August, 2021
14
May, 2023
10
November, 2020
Available data
64
bed narrowPeak
64
xls
57
txt
1
hic
Organism
152
Homo sapiens
Biosample type
146
tissue
6
cell line
Organ
142
kidney
10
pancreas
6
epithelium
Project
152
AMP
Genome assembly (visualization)
75
GRCh38
1
hg19
Lab
1050
AMP-T2D consortium
314
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
123
Kyle Gaulton, UCSD
47
KPMP
24
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
1
Maike Sander, UCSD
Audit category:
6
inconsistent ontology term
assay_title!
snDrop-seq
files.file_type!
bigWig
BIOSAMPLE
ASSAY
152 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
MeRIP-seq
snATAC-seq
Hi-C
tissue
kidney
75
49
11
6
1
islet of Langerhans
4
cell line
EndoC_BH1
6
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