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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
31
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
2
pCHi-C
1
WGBS
Assay category
43
DNA accessibility
31
DNA binding
9
Transcription
3
3D chromatin structure
1
DNA methylation
Target of assay
28
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
11
October, 2019
10
February, 2021
6
August, 2021
4
December, 2018
4
March, 2020
3
February, 2020
3
November, 2018
1
January, 2019
1
July, 2019
Available data
204
bam
bigWig
143
bed narrowPeak
92
bigBed narrowPeak
69
tsv
27
fastq
14
bed broadPeak
14
bigBed broadPeak
12
bed bed3+
6
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
3
hic
2
bedpe bed3+
2
hdf5
1
tar
Organism
89
Homo sapiens
Biosample type
72
tissue
10
cell line
7
primary cell
Organ
321
pancreas
222
epithelium
220
kidney
169
heart
169
liver
113
connective tissue
101
bone element
81
vasculature
80
blood vessel
65
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
19
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
89
AMP
Genome assembly (visualization)
43
GRCh38
11
hg19
Lab
89
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
snDrop-seq
files.file_type!
bigWig
BIOSAMPLE
ASSAY
89 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
pCHi-C
WGBS
tissue
coronary artery
35
2
1
aorta
2
4
1
1
1
spleen
8
1
tibial artery
5
1
ascending aorta
3
1
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cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
2
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