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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
DNase-seq
6
ChIP-seq
Assay category
11
DNA accessibility
6
DNA binding
Target of assay
4
histone
4
histone modification
2
RNA binding protein
2
broad histone mark
2
control
narrow histone mark
2
transcription factor
Date released
7
June, 2019
6
October, 2019
4
November, 2017
Available data
159
bam
130
bigWig
108
bed narrowPeak
68
tsv
58
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
13
bed bed3+
6
tagAlign
4
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
17
Homo sapiens
Biosample type
12
primary cell
5
tissue
Organ
448
liver
428
pancreas
247
epithelium
95
connective tissue
78
kidney
59
blood
59
bodily fluid
47
brain
44
adipose tissue
36
limb
35
musculature of body
30
heart
22
spleen
19
embryo
18
ureter
17
vasculature
13
blood vessel
4
artery
4
eye
4
vein
2
nerve
Project
17
AMP
Genome assembly (visualization)
16
hg19
13
GRCh38
Lab
17
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
snDrop-seq
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
17 results
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DNase-seq
ChIP-seq
primary cell
endothelial cell of umbilical vein
2
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
kidney capillary endothelial cell
1
smooth muscle cell of the brain vasculature
1
tissue
coronary artery
2
tibial artery
2
ascending aorta
1
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