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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
386
total RNA-seq
19
ChIP-seq
4
ATAC-seq
2
DNase-seq
2
WGBS
Assay category
386
Transcription
19
DNA binding
6
DNA accessibility
2
DNA methylation
Target of assay
17
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
17
August, 2017
July, 2019
5
October, 2018
1
January, 2018
1
June, 2019
1
November, 2018
1
October, 2017
1
October, 2019
Available data
430
bam
413
bigWig
389
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
413
Homo sapiens
Biosample type
413
tissue
Organ
619
pancreas
614
liver
553
connective tissue
413
adipose tissue
294
epithelium
206
brain
203
heart
145
vasculature
140
blood vessel
124
kidney
90
limb
artery
63
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pituitary gland
Project
413
AMP
Genome assembly (visualization)
411
hg19
410
GRCh38
Lab
413
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
snDrop-seq
month_released!
July, 2019
organ_slims!
artery
BIOSAMPLE
ASSAY
413 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
tissue
adipose tissue
381
1
2
2
white adipose tissue
12
omental fat pad
3
1
2
subcutaneous adipose tissue
2
2
1
visceral abdominal adipose tissue
3
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