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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
3
Hi-C
Assay category
64
DNA accessibility
3
3D chromatin structure
Date released
64
August, 2021
3
October, 2022
Available data
bam
3169
bigWig
1817
bed narrowPeak
1597
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
67
Homo sapiens
Biosample type
64
tissue
3
primary cell
Organ
64
kidney
3
epithelium
3
pancreas
Project
64
AMP
3
HPAP
Genome assembly (visualization)
64
GRCh38
3
hg19
Lab
64
Katalin Susztak, Upenn
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
assay_title!
snDrop-seq
files.file_type!
bam
BIOSAMPLE
ASSAY
67 results
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ATAC-seq
Hi-C
tissue
kidney
64
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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