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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
385
total RNA-seq
141
ChIP-seq
80
single cell RNA-seq
53
ATAC-seq
10
WGBS
3
DNase-seq
2
FAIRE-seq
2
small RNA-seq
1
pCHi-C
Assay category
467
Transcription
141
DNA binding
58
DNA accessibility
10
DNA methylation
Target of assay
100
histone
100
histone modification
52
broad histone mark
48
narrow histone mark
24
control
17
transcription factor
8
RNA binding protein
Date released
168
August, 2017
153
July, 2018
72
September, 2018
40
May, 2021
39
April, 2018
37
February, 2023
37
October, 2018
32
February, 2021
24
May, 2022
20
November, 2019
19
September, 2020
September, 2017
7
August, 2020
7
November, 2018
6
March, 2020
5
October, 2017
4
July, 2019
3
August, 2018
1
August, 2021
1
February, 2020
1
June, 2018
1
March, 2019
Available data
678
bam
618
bigWig
460
fastq
417
tsv
209
bed narrowPeak
86
bigBed narrowPeak
80
zippedFastqFolder
27
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
670
Homo sapiens
Biosample type
385
tissue
258
primary cell
34
cell line
Organ
677
pancreas
634
liver
576
connective tissue
445
adipose tissue
308
epithelium
168
heart
74
vasculature
71
blood vessel
60
blood
60
bodily fluid
58
artery
58
bone element
47
brain
37
embryo
25
spleen
21
kidney
11
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
606
AMP
69
HPAP
2
T1D
Genome assembly (visualization)
570
hg19
562
GRCh38
Lab
581
AMP-T2D consortium
69
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
39
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
assay_title!
snDrop-seq
month_released!
September, 2017
BIOSAMPLE
ASSAY
677 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
DNase-seq
FAIRE-seq
small RNA-seq
pCHi-C
tissue
islet of Langerhans
267
22
6
21
1
1
body of pancreas
3
33
4
2
2
2
pancreas
1
16
2
1
1
primary cell
pancreatic alpha cell
52
13
12
11
6
pancreatic beta cell
21
13
12
8
pancreatic ductal cell
4
13
10
4
pancreatic acinar cell
4
8
12
4
pancreatic endocrine cell
23
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cell line
EndoC_BH1
33
1
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