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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
RRBS
4
WGBS
3
DNase-seq
1
FAIRE-seq
Assay category
129
DNA binding
89
Transcription
9
DNA accessibility
8
DNA methylation
Target of assay
103
histone modification
102
histone
narrow histone mark
49
broad histone mark
47
transcription factor
31
control
8
RNA binding protein
3
chromatin remodeller
Date released
314
November, 2017
235
August, 2017
88
November, 2018
December, 2017
76
February, 2023
58
September, 2018
55
October, 2018
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
35
December, 2018
31
February, 2018
27
January, 2019
24
May, 2022
16
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
235
fastq
230
bam
212
bigWig
92
bed narrowPeak
89
tsv
56
tagAlign
30
bigBed narrowPeak
27
bed bed3+
26
bed broadPeak
10
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
230
Homo sapiens
Biosample type
157
tissue
42
in vitro differentiated cells
36
primary cell
Organ
140
pancreas
59
connective tissue
23
liver
21
epithelium
17
adipose tissue
2
musculature of body
Project
235
AMP
Genome assembly (visualization)
203
hg19
197
GRCh38
Lab
235
AMP-T2D consortium
Audit category:
28
missing controlled_by
Audit category:
9
inconsistent control read length
2
inconsistent assembly
assay_title!
snDrop-seq
month_released!
December, 2017
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
235 results
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ChIP-seq
total RNA-seq
ATAC-seq
RRBS
WGBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
14
89
1
1
liver
20
1
1
white adipose tissue
12
pancreas
10
adipose tissue
1
3
+ See 3 more…
in vitro differentiated cells
adipocyte
41
1
primary cell
skeletal muscle myoblast
9
1
1
pancreatic alpha cell
9
1
pancreatic beta cell
9
1
pancreatic endocrine cell
4
pancreatic acinar cell
1
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