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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
Hi-C
1
whole genome sequencing assay
Assay category
4
3D chromatin structure
1
DNA sequencing
Date released
2
August, 2021
1
March, 2019
1
March, 2023
1
October, 2019
Available data
3332
bam
3114
bigWig
1763
bed narrowPeak
1597
tsv
1298
fastq
988
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
5
Homo sapiens
Biosample type
2
primary cell
2
tissue
1
cell line
Organ
1
blood vessel
1
epithelium
1
kidney
1
liver
1
pancreas
1
vasculature
1
vein
Project
4
AMP
1
ITG
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
2
Bing Ren, UCSD
1
AMP-T2D consortium
1
ITG
1
Katalin Susztak, Upenn
Audit category:
1
audit script error
assay_title!
snDrop-seq
files.file_type!
bedpe bed3+
organ_slims!
blood
BIOSAMPLE
ASSAY
5 results
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Clear Filters
Hi-C
whole genome sequencing assay
primary cell
chondrocytes
1
endothelial cell of umbilical vein
1
tissue
islet of Langerhans
1
kidney
1
cell line
HepG2
1
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