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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
total RNA-seq
8
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
61
Transcription
4
DNA accessibility
Date released
February, 2021
57
August, 2021
7
February, 2023
1
May, 2022
1
October, 2022
Available data
1819
bam
1650
bigWig
1210
bed narrowPeak
821
bigBed narrowPeak
786
fastq
656
tsv
276
bed broadPeak
264
bigBed broadPeak
235
bed bed3+
204
tagAlign
73
zippedFastqFolder
66
txt
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
16
hic
10
bed bed3
4
hdf5
4
tar
3
bed bedgraph
2
csv
2
ibed
1
vcf
Organism
65
Homo sapiens
Biosample type
62
tissue
3
in vitro differentiated cells
1
cell line
Organ
57
kidney
pancreas
4
bone element
4
skeleton
1
musculature of body
Project
66
AMP
Genome assembly (visualization)
4
hg19
Lab
57
Katalin Susztak, Upenn
6
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
snDrop-seq
month_released!
February, 2021
organ_slims!
pancreas
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
66 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
kidney
49
8
acetabular part of hip bone
1
ilium
1
ischium
1
pubis
1
+ See 1 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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