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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
25
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
49
DNA accessibility
25
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
64
February, 2021
35
February, 2023
21
October, 2019
3
July, 2019
3
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
93
bam
85
bigWig
74
bed narrowPeak
58
tsv
25
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tagAlign
Organism
132
Homo sapiens
Biosample type
66
tissue
64
cell line
2
primary cell
Organ
879
pancreas
680
liver
647
connective tissue
488
epithelium
466
adipose tissue
366
heart
337
kidney
253
brain
210
vasculature
205
blood vessel
159
bone element
132
artery
105
limb
85
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
19
lung
19
vein
18
ureter
16
skeleton
16
spleen
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
132
AMP
Genome assembly (visualization)
128
GRCh38
93
hg19
Lab
132
AMP-T2D consortium
assay_title!
snDrop-seq
month_released!
March, 2020
target.investigated_as!
control
BIOSAMPLE
ASSAY
132 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
36
3
2
tibial artery
1
1
18
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
4
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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