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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
82
ATAC-seq
82
single cell RNA-seq
41
WGBS
22
snATAC-seq
6
ChIP-seq
Assay category
104
DNA accessibility
82
Transcription
41
DNA methylation
6
DNA binding
Target of assay
6
control
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
April, 2018
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
77
bam
77
fastq
73
bigWig
48
tsv
43
bed narrowPeak
5
bigBed narrowPeak
3
bed bed3+
1
txt
Organism
233
Homo sapiens
Biosample type
187
primary cell
46
tissue
Organ
146
pancreas
118
epithelium
20
liver
2
connective tissue
2
musculature of body
Project
134
HPAP
99
AMP
Genome assembly (visualization)
94
hg19
55
GRCh38
Lab
134
Klaus Kaestner, Upenn
61
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
1
audit script error
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
233 results
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Clear Filters
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
ChIP-seq
primary cell
pancreatic alpha cell
24
7
25
Langerhans cell
33
21
pancreatic beta cell
15
9
16
pancreatic acinar cell
5
5
pancreatic delta cell
4
+ See 11 more…
tissue
islet of Langerhans
18
6
liver
20
skeletal muscle tissue
1
1
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