Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
147
ChIP-seq
75
single cell RNA-seq
56
ATAC-seq
10
WGBS
3
DNase-seq
2
FAIRE-seq
Assay category
147
DNA binding
75
Transcription
61
DNA accessibility
10
DNA methylation
Target of assay
100
histone
100
histone modification
52
broad histone mark
48
narrow histone mark
30
control
17
transcription factor
8
RNA binding protein
Date released
79
August, 2017
46
September, 2018
37
July, 2018
35
October, 2018
34
April, 2018
18
May, 2022
11
September, 2017
7
August, 2020
7
November, 2018
6
February, 2021
5
October, 2017
3
August, 2018
3
September, 2020
1
June, 2018
1
March, 2019
Available data
359
bam
299
bigWig
293
fastq
214
bed narrowPeak
91
bigBed narrowPeak
91
tsv
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
3
cool
1
bedpe
1
hdf5
Organism
286
Homo sapiens
Biosample type
177
primary cell
116
tissue
Organ
460
liver
293
pancreas
176
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
24
spleen
23
embryo
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
277
AMP
16
HPAP
Genome assembly (visualization)
244
hg19
238
GRCh38
Lab
257
AMP-T2D consortium
18
Kyle Gaulton, UCSD
16
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
whole genome sequencing assay
award.project!
community
BIOSAMPLE
ASSAY
293 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
13
12
13
6
pancreatic beta cell
13
12
10
pancreatic ductal cell
13
9
4
pancreatic endocrine cell
23
pancreatic acinar cell
8
9
5
+ See 5 more…
tissue
islet of Langerhans
28
6
20
1
1
body of pancreas
33
4
2
2
pancreas
16
2
1
See all biosamples
Download