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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
11
DNase-seq
6
single cell RNA-seq
2
Hi-C
1
pCHi-C
Assay category
11
DNA accessibility
6
Transcription
2
3D chromatin structure
Date released
7
June, 2019
6
August, 2021
4
October, 2019
2
July, 2019
1
March, 2020
Available data
133
bed narrowPeak
127
bam
97
bigWig
83
bigBed narrowPeak
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
7
tsv
6
fastq
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
20
Homo sapiens
Biosample type
12
tissue
8
primary cell
Organ
126
heart
120
pancreas
99
epithelium
91
kidney
44
brain
37
musculature of body
36
connective tissue
36
limb
20
vasculature
18
blood vessel
18
liver
18
ureter
10
adipose tissue
6
artery
4
eye
3
embryo
2
intestine
2
nerve
2
spleen
2
vein
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
stomach
1
thymus
1
urinary bladder
Project
20
AMP
Genome assembly (visualization)
12
hg19
11
GRCh38
Lab
20
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
total RNA-seq
whole genome sequencing assay
BIOSAMPLE
ASSAY
20 results
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DNase-seq
single cell RNA-seq
Hi-C
pCHi-C
tissue
aorta
4
1
coronary artery
2
pulmonary artery
2
tibial artery
2
ascending aorta
1
primary cell
brain microvascular endothelial cell
1
1
endothelial cell of umbilical vein
2
choroid plexus epithelial cell
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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