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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
total RNA-seq
43
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
whole genome sequencing assay
Assay category
106
Transcription
82
DNA accessibility
43
DNA binding
3
3D chromatin structure
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
406
November, 2017
322
August, 2017
284
October, 2019
244
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
April, 2018
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
2
November, 2020
1
August, 2022
Available data
106
bed narrowPeak
98
tsv
64
xls
34
bam
32
bigWig
24
tagAlign
8
txt
5
bed bed3+
2
bedpe bed3+
2
hic
Organism
243
Homo sapiens
Biosample type
179
tissue
35
in vitro differentiated cells
26
cell line
4
primary cell
Organ
92
heart
81
kidney
25
liver
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
3
pancreas
2
artery
1
adipose tissue
Project
244
AMP
Genome assembly (visualization)
90
GRCh38
45
hg19
Lab
136
AMP-T2D consortium
79
Katalin Susztak, Upenn
25
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_title!
total RNA-seq
whole genome sequencing assay
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
BIOSAMPLE
ASSAY
244 results
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Clear Filters
single cell RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
8
64
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
10
21
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
18
2
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
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