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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
total RNA-seq
5
STARR-seq
3
Hi-C
1
ATAC-seq
whole genome sequencing assay
Assay category
18
DNA binding
3
3D chromatin structure
1
DNA accessibility
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
25
August, 2021
2
March, 2019
Available data
14
bed narrowPeak
14
bigWig
2
bedpe bed3+
2
hic
1
bedpe
Organism
27
Homo sapiens
Biosample type
24
cell line
3
tissue
Organ
21
liver
3
pancreas
2
kidney
Project
27
AMP
Genome assembly (visualization)
17
hg19
1
GRCh38
Lab
2629
AMP-T2D consortium
232
Klaus Kaestner, Upenn
228
Kyle Gaulton, UCSD
93
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
27
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_title!
total RNA-seq
whole genome sequencing assay
organ_slims!
eye
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
STARR-seq
Hi-C
ATAC-seq
cell line
HepG2
18
2
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
2
1
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