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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
6
Hi-C
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
29
DNA binding
6
3D chromatin structure
6
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
June, 2019
26
August, 2017
8
July, 2019
7
May, 2019
3
March, 2020
2
May, 2022
1
January, 2018
Available data
23
bigWig
19
bed narrowPeak
15
tagAlign
13
bed broadPeak
10
bam
6
bigBed narrowPeak
4
bed bedMethyl
4
bigBed bedMethyl
3
tsv
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
txt
Organism
47
Homo sapiens
Biosample type
45
tissue
2
primary cell
Organ
599
liver
545
pancreas
373
epithelium
286
heart
239
brain
213
kidney
192
connective tissue
168
vasculature
164
blood vessel
97
bone element
92
adipose tissue
83
artery
83
limb
69
blood
69
bodily fluid
47
musculature of body
38
nerve
35
eye
25
spleen
23
embryo
22
vein
20
lung
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
47
AMP
Genome assembly (visualization)
28
hg19
8
GRCh38
Lab
47
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
total RNA-seq
whole genome sequencing assay
month_released!
June, 2019
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
muscle of leg
7
1
gastrocnemius medialis
4
psoas muscle
2
1
primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
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