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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
8
snATAC-seq
total RNA-seq
2
ATAC-seq
2
DNase-seq
Assay category
95
DNA binding
12
DNA accessibility
Target of assay
51
transcription factor
25
histone
25
histone modification
17
control
16
broad histone mark
10
RNA binding protein
10
chromatin remodeller
9
narrow histone mark
Date released
38
October, 2019
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
1
January, 2018
Available data
98
bam
82
bigWig
81
bed narrowPeak
80
bigBed narrowPeak
60
fastq
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
107
Homo sapiens
Biosample type
61
cell line
38
tissue
8
primary cell
Organ
601
liver
549
pancreas
393
epithelium
321
heart
294
kidney
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
99
AMP
8
T1D
Genome assembly (visualization)
82
hg19
81
GRCh38
Lab
99
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_title!
total RNA-seq
whole genome sequencing assay
BIOSAMPLE
ASSAY
107 results
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ChIP-seq
snATAC-seq
ATAC-seq
DNase-seq
cell line
GM12878
60
1
tissue
tibial nerve
35
1
2
primary cell
peripheral blood mononuclear cell
8
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