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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
total RNA-seq
87
single cell RNA-seq
72
ChIP-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
RRBS
9
Hi-C
4
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
212
DNA accessibility
87
Transcription
72
DNA binding
58
DNA methylation
9
3D chromatin structure
Target of assay
39
histone
39
histone modification
32
control
26
broad histone mark
13
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
134
May, 2022
100
May, 2020
54
May, 2021
46
February, 2021
40
September, 2020
17
August, 2017
13
July, 2019
12
February, 2023
12
October, 2019
8
January, 2021
8
June, 2019
3
November, 2017
3
October, 2022
1
August, 2021
1
March, 2020
1
May, 2019
1
November, 2018
1
September, 2018
Available data
153
zippedFastqFolder
92
bigWig
88
fastq
84
bam
34
bed narrowPeak
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
5
bed bed3+
5
hic
4
bed broadPeak
4
bedpe bed3+
4
bigBed broadPeak
4
bigBed narrowPeak
4
hdf5
3
cool
2
csv
2
tagAlign
1
tar
Organism
455
Homo sapiens
Biosample type
782
tissue
455
primary cell
189
cell line
120
in vitro differentiated cells
7
stem cell
Organ
128
epithelium
101
pancreas
15
vasculature
13
blood vessel
10
vein
8
blood
8
bodily fluid
8
kidney
7
brain
7
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
Project
222
HPAP
209
AMP
24
T1D
Genome assembly (visualization)
476
hg19
GRCh38
Lab
222
Klaus Kaestner, Upenn
176
AMP-T2D consortium
57
Kyle Gaulton, UCSD
Audit category:
31
audit script error
18
inconsistent ontology term
assay_title!
total RNA-seq
assembly!
GRCh38
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
455 results
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ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
6
31
1
CD8-positive, alpha-beta T cell
2
33
1
pancreatic beta cell
13
6
16
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
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