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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
total RNA-seq
3
Hi-C
2
ATAC-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
41
DNA binding
3
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
23
control
18
histone
18
histone modification
10
narrow histone mark
8
broad histone mark
Date released
25
November, 2017
8
October, 2019
6
July, 2019
6
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
36
tagAlign
28
bam
8
bigWig
fastq
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bed narrowPeak
2
bigBed bedMethyl
2
tsv
1
bed bed3
1
bed broadPeak
1
bigBed narrowPeak
Organism
51
Homo sapiens
Biosample type
47
tissue
4
primary cell
Organ
183
pancreas
152
epithelium
124
heart
108
liver
100
kidney
89
bone element
86
connective tissue
51
brain
44
adipose tissue
40
vasculature
39
blood vessel
39
musculature of body
36
eye
23
limb
20
lung
11
artery
11
nerve
10
vein
9
blood
9
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
51
AMP
Genome assembly (visualization)
GRCh38
142
hg19
Lab
51
AMP-T2D consortium
assay_title!
total RNA-seq
assembly!
GRCh38
files.file_type!
fastq
organ_slims!
pericardium
BIOSAMPLE
ASSAY
51 results
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ChIP-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
6
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
caudate nucleus
3
+ See 14 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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