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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
24
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
24
DNA accessibility
Date released
324
November, 2017
216
May, 2021
134
May, 2022
127
August, 2017
101
May, 2020
69
February, 2021
66
August, 2021
64
October, 2019
62
November, 2018
55
June, 2019
48
July, 2018
47
September, 2018
46
December, 2017
43
April, 2018
43
September, 2020
30
February, 2023
28
December, 2018
24
February, 2018
20
November, 2019
18
January, 2019
18
July, 2019
18
March, 2020
8
January, 2021
8
November, 2020
7
August, 2020
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
December, 2019
1
January, 2018
Available data
12
tsv
5
bed bed3
4
bed bed3+
3
bed bedgraph
3
bigWig
3
txt
2
bed narrowPeak
Organism
29
Homo sapiens
Biosample type
tissue
12
in vitro differentiated cells
12
primary cell
6
cell line
Organ
9
connective tissue
1
epithelium
1
pancreas
Project
25
AMP
5
T1D
Genome assembly (visualization)
12
hg19
Lab
22
AMP-T2D consortium
5
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
9
inconsistent ontology term
assay_title!
total RNA-seq
assembly!
hg18
biosample_type!
tissue
files.file_type!
bedpe
BIOSAMPLE
ASSAY
30 results
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Clear Filters
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR genome editing followed by sgRNA sequencing
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
embryonic stem cell
1
+ See 2 more…
primary cell
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
cell line
EndoC_BH1
3
2
1
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