Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
85
single cell RNA-seq
56
snATAC-seq
49
ATAC-seq
47
WGBS
16
pCHi-C
1
Hi-C
Assay category
105
DNA accessibility
85
Transcription
47
DNA methylation
1
3D chromatin structure
Date released
134
May, 2022
45
February, 2021
43
September, 2020
16
May, 2021
8
January, 2021
7
August, 2020
1
March, 2023
Available data
153
zippedFastqFolder
77
fastq
10
bigWig
6
tsv
1
hic
Organism
254
Homo sapiens
Biosample type
254
primary cell
88
tissue
7
cell line
2
stem cell
Organ
96
epithelium
96
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
229
HPAP
AMP
24
T1D
1
ITG
Genome assembly (visualization)
95
GRCh38
hg19
Lab
229
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
27
audit script error
1
inconsistent ontology term
assay_title!
total RNA-seq
assembly!
hg19
award.project!
AMP
BIOSAMPLE
ASSAY
254 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
31
pancreatic beta cell
16
16
peripheral blood mononuclear cell
8
pancreatic acinar cell
4
+ See 16 more…
See all biosamples
Download