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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
16
ATAC-seq
8
DNase-seq
6
MeRIP-seq
2
Capture-C
total RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
26
DNA binding
24
DNA accessibility
Target of assay
28
control
3
histone
3
histone modification
3
nucleotide modification
broad histone mark
1
narrow histone mark
Date released
17
May, 2021
12
August, 2017
8
June, 2019
6
November, 2020
6
October, 2019
3
August, 2021
3
December, 2017
2
November, 2019
1
December, 2019
1
February, 2023
1
May, 2019
Available data
32
bam
15
fastq
6
bed bed3+
6
bed broadPeak
6
bed narrowPeak
6
bigBed broadPeak
6
bigBed narrowPeak
6
bigWig
2
tagAlign
1
tsv
Organism
59
Homo sapiens
Biosample type
28
primary cell
27
cell line
4
in vitro differentiated cells
1
tissue
Organ
182
heart
176
kidney
124
liver
114
pancreas
85
bone element
66
blood vessel
66
vasculature
65
brain
61
connective tissue
60
epithelium
46
artery
43
adipose tissue
23
limb
20
lung
17
musculature of body
14
blood
14
bodily fluid
11
nerve
11
spleen
8
embryo
8
eye
5
gonad
5
ovary
3
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
HPAP
60
AMP
Genome assembly (visualization)
hg19
168
GRCh38
Lab
54
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
30
inconsistent ontology term
1
audit script error
assay_title!
total RNA-seq
assembly!
hg19
award.project!
HPAP
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
60 results
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ChIP-seq
ATAC-seq
DNase-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
endothelial cell of umbilical vein
3
kidney tubule cell
3
epithelial cell of proximal tubule
2
+ See 6 more…
cell line
EndoC_BH1
2
16
6
2
1
in vitro differentiated cells
Hepatic endoderm
2
hepatocyte
1
pancreatic PP cell
1
tissue
renal glomerulus
1
See all biosamples
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