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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
total RNA-seq
3
pCHi-C
1
DNase-seq
Assay category
22
DNA binding
1
DNA accessibility
Target of assay
12
histone
12
histone modification
10
control
8
broad histone mark
4
narrow histone mark
Date released
19
August, 2017
4
June, 2019
1
August, 2018
1
March, 2020
1
May, 2021
Available data
14
tagAlign
9
bam
6
fastq
1
bed bed3+
1
bed broadPeak
1
bed narrowPeak
1
bedpe bed3+
1
bigBed broadPeak
1
bigBed narrowPeak
1
bigWig
1
tsv
Organism
26
Homo sapiens
Biosample type
tissue
20
in vitro differentiated cells
5
primary cell
1
stem cell
Organ
157
epithelium
143
pancreas
55
liver
26
connective tissue
18
kidney
14
blood
14
bodily fluid
8
blood vessel
8
embryo
8
vasculature
5
heart
5
vein
2
artery
2
musculature of body
1
adipose tissue
1
bone element
1
bone marrow
1
eye
1
mammary gland
Project
25
AMP
1
T1D
Genome assembly (visualization)
hg19
48
GRCh38
Lab
25
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
assay_title!
total RNA-seq
assembly!
hg19
biosample_type!
tissue
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
pCHi-C
DNase-seq
in vitro differentiated cells
adipocyte
19
white fat cell
1
primary cell
cardiac fibroblast
2
1
adult endothelial progenitor cell
1
mesenchymal stem cell
1
stem cell
mesenchymal stem cell
1
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